kstreet13 Goto Github PK

assignment

Assignment template for PM 566 that includes automatic rendering of Quarto documents

bioc2020trajectories

Trajectory inference and differential expression over multiple conditions in scRNA-seq

biocstickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

braunstreetrcc

breakaway

Species richness with high diversity

cytofcellid

identification of single, whole cells in CyTOF data

dice

An example R package

dune_paper

Scripts to reproduce analyses of Dune paper.

genuary

gomodules

lab3

lineagesimulation

Code and data for the lineage inference simulation study presented in the Slingshot paper.

mazes

some fun stuff for generating and visualizing mazes

mazing

Utilities for making and plotting mazes

mcb293s

MCB 293S: Resources for the 5-week module in biostatistics.

merger

methods for merging clusters to maximize agreement across multiple clusterings

neutrophils

pbrd

pr2021replicathon

rafalab.github.io

web page

scry

Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).

scrysticker

Code and images for the scry hex sticker

slingshot

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

slingshot-docker

Cell lineage and pseudotime inference for single-cell transcriptomics

slingshot-paper

tcr_analysis_scripts

Any scripts related to the TCRseq project that don't belong in the package.

testsite

thingsandstuff

Things I've found useful enough to want on multiple computers.

tradeseq

TRAjectory-based Differential Expression analysis for SEQuencing data

trajectoryutils

Trajectory utilities to share between TSCAN, slingshot and other packages.