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topgo-feat's Introduction

topGO

The topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

Installation

The topGO package binaries are available through Bioconductor:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("topGO")

Documentation

Documentation is available on Bioconductor

topgo-feat's People

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topgo-feat's Issues

could not find function "enrichment_barplot"

Hello,

I'm trying to make a bar plot of the enriched go terms as shown in https://ycl6.github.io/GO-Enrichment-Analysis-Demo/2_topGO.html but it's not working.

I have tried installing the github version which should have the enrichment_barplot function but it's still not working. Any advice?

devtools::install_github("ycl6/topGO-feat", ref = "v2.41.0-barplot", force = TRUE)
library(topGO)
png(paste0(outTitle, "_up.png"), width = 8, height = 6, units = "in", res = 300)
enrichment_barplot(up_GOdata, up_Res, showTerms = 20, numChar = 50, orderBy = "Scores",
title = paste0("GO-", ontology," ORA of up-regulated genes"))
invisible(dev.off())

Error in enrichment_barplot(up_GOdata, up_Res, showTerms = 20, numChar = 50, :
could not find function "enrichment_barplot"

Thank you,

Marcela

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