Hello, I'm trying to make a bar plot of the enriched go terms as sho

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could not find function "enrichment_barplot" about topgo-feat HOT 3 CLOSED

marce-sarrias commented on August 21, 2024

could not find function "enrichment_barplot"

from topgo-feat.

Comments (3)

ycl6 commented on August 21, 2024

Hi @marce-sarrias

I think you aren't installing the correct version. Please try the below command (without the ref param):

devtools::install_github("ycl6/topGO-feat")

And the package should have the enrichment_barplot function. Please let me know if that works for you.

library(topGO)

?enrichment_barplot

enrichment_barplot            package:topGO            R Documentation

Create a barplot using ggplot2 to show enrichment results

Description:

     This function takes a ‘topGOdata’ object and a ‘topGOresult’
     object to display the enrichment statistics of top ‘N’ GO terms.
     It wraps ‘ggplot2’ plotting, and returns a ‘ggplot2’ graphic
     object.

Usage:

     enrichment_barplot(object, result, showTerms = 10, numChar = 40, 
                        orderBy = "Scores", y = "Count", 
                        xlab = NULL, ylab = NULL, title = NULL)

from topgo-feat.

marce-sarrias commented on August 21, 2024

Got It, thank you! I love your tutorial!!

Marcela

from topgo-feat.

ycl6 commented on August 21, 2024

Hi @marce-sarrias Thanks, I appreciate your feedback. I'll close this issue.

from topgo-feat.

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