Comments (4)
vkozareva
commented on July 21, 2024
This is because macOS's default compiler doesn't support openMP (right now required by RcppArmadillo). Have you tried following the recommended extra steps for installation on macOS (detailed here)?
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lucygarner
commented on July 21, 2024
Thank you for the advice. I have followed the installation guide and run the "quick check" at the end, which works fine, however I am still getting an error when trying to install liger.
The error is now:
Is this a related error?
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vkozareva
commented on July 21, 2024
This has to do with Mojave -- did you make sure to follow the Mojave specific instructions for installing xcode CLI (found in a note on the post I referenced)? If that didn't work, can you see if any of the suggestions for installing xcode here work for you?
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lucygarner
commented on July 21, 2024
Thank you - I have manage to fix this by reinstalling Command Line tools and running:
sudo installer -pkg \ /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg \ -target /
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Related Issues (20)
- problem with read10X and createLiger HOT 3
- Lowest suggested value for lambda? HOT 1
- "shared factor neighborhood" not used anymore as described in the paper? HOT 3
- log transform data first? HOT 1
- Another request for help regarding SCTransform HOT 1
- Generate gene and promoter bed files
- Problems with scaleNotCenter() HOT 2
- Prepare for upcoming Seurat v5 release HOT 1
- Bug in Seurat's wrapper function HOT 1
- cran package archived HOT 6
- NaNs during `SelectGenes()` HOT 1
- Error on makeFeatureMatrix HOT 1
- How to improving similarity between snRNA-seq and snATAC-seq nuclei, by tuning parameters like 'k', 'lambda'? HOT 4
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- Issue with loading old liger object via convertOldLiger function HOT 3
- Error in `signal_stage()` HOT 4
- invalid type "list" in R_matrix_as_sparse error HOT 3
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- Query on building shared factor neighborhood graph HOT 2
- Error when performing the Wilcoxon test on the peak counts HOT 1
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