Comments (1)
Hi, thanks for trying out!
If I understand correctly, the steps "Stage I: 1~5" only demonstrate how users should generate a mapped-to-gene matrix from the ATAC fragment data. We didn't share the input data for these steps after all. The R code that users can run by themselves includes: The very first block after "For convenience...", the step starting from "6.", and everything after that. If you do have your own ATAC data, you can follow the workflow we demonstrated from 1. to 5. and see if it works.
Best,
LIGER team
from liger.
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