Comments (1)
That's a great catch!
We just made a new release of rliger package 2.0. And we are abandoning the seurat wrappers since we allowed the native Seurat object support in the new version. I.e. you can directly call a rliger function using a Seurat object now. The rliger wrapper functions in SeuratWrappers package is not yet updated accordingly but we are planning on deprecating them.
For the specific point you're making, I'm very sure that now the feature names come directly from the scaled matrix objects. And it doesn't matter if you use a Seurat or liger object.
Yichen
from liger.
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