uofs-pulse-binfo / tripal_qtl Goto Github PK

Content Types

• Genetic Maps
  • List QTL on the current map.
• Trait Pages
  • List QTL associated with the current trait through feature_cvterm.
• Genetic Marker Pages
  • List the QTL for markers within the confidence interval.

Columns

• genetic map w/ link,
• trait w/ link,
• QTL name w/ link,
• linkage group & position
• confidence interval
• peak lod
• additive effect w/ parent

Links

• If Tripal Map is installed then link to the MapViewer.
• If Tripal JBrowse is installed, link to JBrowse. For JBrowse we want tracks which highlight the markers within a QTL confidence interval (1 LOD drop). Ideally we would colour code these markers using a gradient with the darker colour nearest the peak.

The images are actually in good quality but not displayed properly.
possible solution:
1, reload images, being too wide is likely the cause of image being indistinct
2, give a NOTE of viewing full image in new site

Allow link to original population through stock_featuremap.
Indicate publication/contacts during loading.

1. All included markers are created as type genetic_marker with MAIN:marker_type as SNP.
2. Marker name and locus name are the same.