Topic: pathogen Goto Github
Some thing interesting about pathogen
Some thing interesting about pathogen
pathogen,Predict plasmids from uncorrected long read data
User: andrewjpage
pathogen,CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.
Organization: ccdmb
pathogen,Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
User: chgibb
Home Page: https://chgibb.github.io/PHATDocs
pathogen,An alignment-independent tool for the study of pathogen sequence diversity
User: chonglc
Home Page: https://chonglc.github.io/MinimalSetofViralPeptidome-UNIQmin/
pathogen,A data specification for harmonizing One Health AMR pathogen genomics contextual data. The specification provides standardized (ontology-based) fields and terms which are implemented via a spreadsheet collection template, supported by field and reference guides as well as different curation and new term request SOPs.
Organization: cidgoh
pathogen,The Pathogen Transmission Ontology describes the transmission methods of human disease pathogens from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.
Organization: diseaseontology
Home Page: https://disease-ontology.org/resources/pathogen-transmission-ontology
pathogen,:skull: CLI tool for updating vim pathogen stuff.
User: eliverlara
pathogen,STX operon typing
User: evolarjun
pathogen,病原微生物高通量测序数据分析笔记
User: indexofire
Home Page: https://pathongs.hzcdclab.org
pathogen,Pathogen NGS Documentary
User: indexofire
Home Page: https://indexofire.github.io/pathongs
pathogen,My dotfiles Installation with Interactive Menu
User: ldmcdaniel
pathogen,AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
Organization: ncbi
Home Page: https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder/
pathogen, StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
Organization: ncbi
pathogen,PoPS Core: C++ library for the Pest or Pathogen Spread Model
Organization: ncsu-landscape-dynamics
Home Page: https://ncsu-landscape-dynamics.github.io/pops-core
pathogen,PoPS (Pest or Pathogen Spread) R Package
Organization: ncsu-landscape-dynamics
Home Page: https://ncsu-landscape-dynamics.github.io/rpops/
pathogen,WLA Assembly (6502, 65C02, 65816) syntax highlighting
User: newlunarfire
pathogen,Nextstrain build for avian influenza viruses
Organization: nextstrain
Home Page: http://nextstrain.org/avian-flu
pathogen,Nextstrain build for dengue virus
Organization: nextstrain
Home Page: https://nextstrain.org/dengue
pathogen,SARS-CoV-2 variant growth rates and frequency forecasts
Organization: nextstrain
Home Page: https://nextstrain.org/sars-cov-2/forecasts/
pathogen,Nextstrain build for mpox virus
Organization: nextstrain
Home Page: https://nextstrain.org/mpox
pathogen,Nextstrain build for novel coronavirus SARS-CoV-2
Organization: nextstrain
Home Page: https://nextstrain.org/ncov
pathogen,A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Organization: nextstrain
pathogen,Workflow for RSV analyses on Nextstrain.org
Organization: nextstrain
Home Page: https://nextstrain.org/rsv
pathogen,Scripts. config, and snakefiles for seasonal-flu nextstrain builds
Organization: nextstrain
pathogen,Nextstrain build for Zika virus
Organization: nextstrain
Home Page: https://nextstrain.org/zika
pathogen,Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Organization: nf-core
Home Page: https://nf-co.re/taxprofiler
pathogen,Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
User: nickjcroucher
Home Page: http://nickjcroucher.github.io/gubbins/
pathogen,Mycobacterial pipeline
Organization: pathogen-genomics-cymru
pathogen,Comparative TraDIS analysis
Organization: quadram-institute-bioscience
pathogen,Antimicrobial Resistance Identification By Assembly
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/ariba/
pathogen,Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/Artemis
pathogen,Get assembly statistics from FASTA and FASTQ files
Organization: sanger-pathogens
pathogen,Improve the quality of a denovo assembly by scaffolding and gap filling
Organization: sanger-pathogens
pathogen,A set of tools to analyse the output from TraDIS analyses
Organization: sanger-pathogens
Home Page: https://sanger-pathogens.github.io/Bio-Tradis/
pathogen,A tool to circularize genome assemblies
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/circlator/
pathogen,Python3 scripts to manipulate FASTA and FASTQ files
Organization: sanger-pathogens
pathogen,Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/gff3toembl/
pathogen,de novo virus assembler of Illumina paired reads
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/iva/
pathogen,Multilocus sequence typing by blast using the schemes from PubMLST
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/mlst_check/
pathogen,Assembling the cause of phenotypes and genotypes from NGS data
Organization: sanger-pathogens
Home Page: https://sanger-pathogens.github.io/plasmidtron/
pathogen,Rapid large-scale prokaryote pan genome analysis
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/Roary
pathogen,SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Organization: sanger-pathogens
Home Page: https://sanger-pathogens.github.io/saffrontree/
pathogen,k-mer based Pipeline to identify the Serotype from Illumina NGS reads
Organization: sanger-pathogens
Home Page: https://sanger-pathogens.github.io/seroba/
pathogen,Finds SNP sites from a multi-FASTA alignment file
Organization: sanger-pathogens
Home Page: http://sanger-pathogens.github.io/snp-sites/
pathogen,Vim pathogen plugin manager
User: selectnull
pathogen,Plugin manager of vim.
User: shylock-hg
pathogen,
Organization: slime-lang
pathogen,Repository containing lists of all published ancient metagenomic (and related) samples and libraries
Organization: spaam-community
Home Page: http://www.spaam-community.org/AncientMetagenomeDir/
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