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Disease Ontology's Projects

anmods icon anmods

Animal Models of Human Diseases

assessing_do_use icon assessing_do_use

The code, data, and figures used or produced in the case study with the Human Disease Ontology for "Assessing Resource Use: A Case Study with the Human Disease Ontology" (DATABASE).

diseasedriversontology icon diseasedriversontology

Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in collaboration with EnvO, ExO, ECTO and ChEBI.

do.utils icon do.utils

R package for improvement and analysis of the Human Disease Ontology (DO), including semi-automated use assessment from published literature.

owlflattener icon owlflattener

OWL Utility to flatten the hierarchical axioms down from ancestors to children

pathogentransmissionontology icon pathogentransmissionontology

The Pathogen Transmission Ontology describes the transmission methods of human disease pathogens from one host, reservoir, or source to another host. The pathogen transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles.

symptomontology icon symptomontology

The symptom ontology was designed around the guiding concept of a symptom being: “A perceived change in function, sensation or appearance reported by a patient indicative of a disease”. Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it’s scope to capture and document in a more robust manor these two sets of terms. Understanding that at times, the same term may be both a Sign and a Symptom. The Symptom Ontology is available under CC0 license (https://creativecommons.org/publicdomain/zero/1.0/).

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