shubhamchandak94 / harc Goto Github PK
View Code? Open in Web Editor NEWFastq compression
Fastq compression
I have fasta files (NOT Fastq) to compress. Between HARC and Spring which compressor should I be using? Is it at all possible to compress fasta files with these.
Thanks.
Hello developers,
We installed HARC succesfully in Centos 7, but when running it to compress it throwedan error. We tested it over different datasets of our own (small, and medium size) and we got the problem writen below. Then we downloaded one of the files suggested by authors in the supplementary data and got the same exact error. In all of of the tests we tried both options: preserving and not preserving original reads.
Any help about what we should do ?
Thank you very much
*** Preprocessing ***
SRR554369_1.fastq
Read length: 100
Total number of reads: 1657871
Total number of reads without N: 1633521
Preprocessing Done!
src/reorder.cpp: In function ‘void reorder(std::bitset<200>, bbhashdict)’:
src/reorder.cpp:685:42: error: ‘accumulate’ is not a member of ‘std’
std::cout << "Reordering done, "<<
std::accumulate(unmatched,unmatched+num_thr,0) <<" were unmatched\n";
Hello,
I installed HARC succesfully in Centos 7, but when trying to compress it throws this error:
/harc: line 104: 7z: command not found
I have installed p7zip successfully but It looks like the way to execute it in Centos is through the command "7za".
Any idea about what I should do ?
Thank you very much
encoder.cpp not compiling and throws errors related to:
src/cpp/noisy/encoder.cpp:229:14: error: ‘array’ is not a member of ‘std’
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.