shubhamchandak94 / harc Goto Github PK

I have fasta files (NOT Fastq) to compress. Between HARC and Spring which compressor should I be using? Is it at all possible to compress fasta files with these.

Thanks.

Hello developers,
We installed HARC succesfully in Centos 7, but when running it to compress it throwedan error. We tested it over different datasets of our own (small, and medium size) and we got the problem writen below. Then we downloaded one of the files suggested by authors in the supplementary data and got the same exact error. In all of of the tests we tried both options: preserving and not preserving original reads.

Any help about what we should do ?
Thank you very much

*** Preprocessing ***
SRR554369_1.fastq
Read length: 100
Total number of reads: 1657871
Total number of reads without N: 1633521
Preprocessing Done!
src/reorder.cpp: In function ‘void reorder(std::bitset<200>, bbhashdict)’:
src/reorder.cpp:685:42: error: ‘accumulate’ is not a member of ‘std’
std::cout << "Reordering done, "<<
std::accumulate(unmatched,unmatched+num_thr,0) <<" were unmatched\n";

Hello,
I installed HARC succesfully in Centos 7, but when trying to compress it throws this error:
/harc: line 104: 7z: command not found
I have installed p7zip successfully but It looks like the way to execute it in Centos is through the command "7za".

Any idea about what I should do ?
Thank you very much

encoder.cpp not compiling and throws errors related to:
src/cpp/noisy/encoder.cpp:229:14: error: ‘array’ is not a member of ‘std’