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Shubham Chandak's Projects

bbhash icon bbhash

Bloom-filter based minimal perfect hash function library

beautiful-jekyll icon beautiful-jekyll

:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll

bonito icon bonito

Convolution Basecaller for Oxford Nanopore Reads

ctcdecoder icon ctcdecoder

Connectionist Temporal Classification (CTC) decoding algorithms: best path, prefix search, beam search and token passing. Implemented in Python and OpenCL.

ctcwordbeamsearch icon ctcwordbeamsearch

Connectionist Temporal Classification (CTC) decoder with dictionary and language model for TensorFlow.

ctw icon ctw

Context Tree Weighting

digital-puppetry icon digital-puppetry

A novel streaming pipeline for reducing bandwidth consumption in video calling.

fastq_denoising icon fastq_denoising

Exploration of fastq denoising approaches for Illumina sequencing data

flif icon flif

Free Lossless Image Format

gatk icon gatk

Official code repository for GATK versions 4 and up

kbestviterbi icon kbestviterbi

Python code for doing k-Best or List decoding with the Viterbi algorithm

leveldb icon leveldb

LevelDB is a fast key-value storage library written at Google that provides an ordered mapping from string keys to string values.

lfzip icon lfzip

Error bounded lossy compression of time series using prediction-quantization approach

libbsc icon libbsc

High performance block-sorting data compression library

nanopore_dna_storage icon nanopore_dna_storage

DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration

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