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xiongxu's Projects
adv-r
Advanced R programming: a book
affypipe
an open-source pipeline for Affymetrix Axiom genotyping workflow on livestock species
baidu-ocr
百度OCR文字识别API For Node.js
baidu_pcs_cli
百度个人云存储API命令行工具
bam2bedgraph2
Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing
bamdraw
bam file visualization scheme
bamradixsort
bam sort with radix algorithm
biotools
A list of useful bioinformatics resources
bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
cayman-theme
A responsive theme for GitHub Pages
chromosomehistogram
Graph histograms of chromosomal locations in R using ggplot2
circlize
circular layout in R
common
Common Lab in Tencent
comp-genomics-class
Code and examples for JHU Computational Genomics class
d3-3.x-api-reference
An archive of the D3 3.x API Reference.
d3-shape
Graphical primitives for visualization, such as lines and areas.
dgtable.js
A Backbone+jQuery high-performance table for web-apps
discount
My C implementation of John Gruber's Markdown markup language
ea-utils
Automatically exported from code.google.com/p/ea-utils
fastq-join
Squared distance for anchored alignment joiner of ea-utils.
fastqc
This is an R package for quality control (QC) of short read fastq files -- a work in progress
gclib
GCLib - genomic C++ code library for some of my Bioinformatics projects
gffcompare
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
gffread
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
hashtable
hash table,hash functions in C
hg19ucsc_canonical
hg19UCSC_canonical transcript/refSeq/symbol And the exons/CDS it contains
highperformancengs
hight performance & useful tools for working with fastq and bam files
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
intervar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
labs
Rmd source files for the HarvardX series PH525x
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