Comments (1)
In trying to reproduce the issue, I am only getting NA values for statistics. This happens only when I gate on non-linear markers (eg CD33 etc). Statistics import fine with scatter. Below is an example with closed point gates.
With quad gates, statistics appear on the bottom left corner on top of each other.
Notice the plots for CD33 x CD20 appear uncompensated. I have seen this before and I have reason to believe it is a Cytobank specific bug (@katdrake you've seen this before). I'm going to have some people look at it on my end and once it's fixed I'll hopefully be able to reproduce and look into the problem with the upper right quad gate, and determine if the "bottom left corner" problem shown here is consistent.
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Related Issues (20)
- gs-to-flowjo parse error HOT 3
- gs_cyto_data and gatingset_to_flowjo, or how to update FCS files for flowjo export HOT 1
- try(eval(substitute(subset)), silent = TRUE) in flowjo_to_gatingset causes error when the subset argument is passed by lapply HOT 1
- CytoML Xml File Parsing Issues HOT 8
- Issue Parsing FlowJo (v10.7.2) XML File HOT 3
- FCS Express compatibility HOT 7
- Get indices of gated events from a FJ workspace / alternative to flowjo_to_gatingset HOT 5
- gs-to-flowjo Singularity issue HOT 2
- Ellipses coordinates are not correct in Gating Set after flowJo workspace parsing - v2.9.0 HOT 4
- R Session Aborts when calling flowjo_to_gatingset() more than once HOT 3
- gatingset_to_flowjo() fails with unsupported transformation: LIN
- Using FlowJo gating on pre-compensated, pre-transformed FCS files HOT 5
- flowjo_to_gatingset troubleshoot: "unknown tranformation type!transforms:linear" HOT 3
- flowjo_to_gatingset(), colname not found: error HOT 2
- Export populations as dataframe from a FlowJo workspace HOT 2
- extract inverse transform
- flowjo_to_gatingset does not accept data.frame as path HOT 5
- flowCore::read.FCS works but CytoML::flowjo_to_gatingset fails; no valid FCS file HOT 11
- boolean gate error
- Incompatible with Apple Silicon Mac HOT 7
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