Comments (3)
mikejiang
commented on July 29, 2024
It doesn't seem to be a properly exported workspace file
e.g. This is from the header of your file
<?mso-application progid="Word.Document"?>
Maybe try to ask the lab to reexport wsp file straight from flowJo?
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wfulp
commented on July 29, 2024
Thanks Mike, you are correct. I received confirmation from the lab they exported the wsp file in Word, so it ended up being an xml export of an already xml file. I'm waiting on the lab to send the new wsp file directly from flowJo, but I'm sure this is the issue.
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wfulp
commented on July 29, 2024
I have confirmed that with the updated xml file I can parse the workspace correctly. Thanks for pointing me in the right direction.
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Related Issues (20)
- CytoML Xml File Parsing Issues HOT 8
- FCS Express compatibility HOT 7
- Get indices of gated events from a FJ workspace / alternative to flowjo_to_gatingset HOT 5
- gs-to-flowjo Singularity issue HOT 2
- Ellipses coordinates are not correct in Gating Set after flowJo workspace parsing - v2.9.0 HOT 4
- R Session Aborts when calling flowjo_to_gatingset() more than once HOT 3
- gatingset_to_flowjo() fails with unsupported transformation: LIN
- Using FlowJo gating on pre-compensated, pre-transformed FCS files HOT 5
- flowjo_to_gatingset troubleshoot: "unknown tranformation type!transforms:linear" HOT 3
- flowjo_to_gatingset(), colname not found: error HOT 2
- Export populations as dataframe from a FlowJo workspace HOT 2
- extract inverse transform
- flowjo_to_gatingset does not accept data.frame as path HOT 5
- flowCore::read.FCS works but CytoML::flowjo_to_gatingset fails; no valid FCS file HOT 11
- boolean gate error
- Incompatible with Apple Silicon Mac HOT 7
- flowjo_to_gatingset ignore range as defined in FCS files HOT 3
- Support for FCS 3.2? HOT 4
- gatingset_to_flowjo hangs
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