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ask-marcus-aurelius

Type a question. Get the passages in Meditations by Marcus Aurelius that are most relevant.

cluster_stability

Some helper functions to visualize the stability of a clustering method for your single-cell data.

conv-ca

Convolution-based cellular automata, with kernel adjustment leading to new rules.

cytof_data_transformations

A brief exploration of different ways to transform CyTOF data.

cytof_pipeline_one_file

How to analyze one CyTOF fcs file.

cytof_som_umatrix

An interrogation of the U-Matrix as a visualization of SOM-clustered CyTOF data.

dimension_reduction_add_noise

Adding noise to data being used as input for dimension reduction tools

dimension_reduction_island_placement

Run t-SNE or UMAP 100 times or more. How does the island placement change between runs?

dimr_spectrum_single_cell

View a spectrum of dimensionality reduction embeddings for your single-cell data ranging from t-SNE like to UMAP like

duckduckgo_2d_search

View several hundred search results at a time with a topic map.

journal_mapper

Convert your journal into a mappable, searchable vector space

knn_sleepwalk

A wrapper around the sleepwalk package that allows for interactive knn visualizations of an embedding.

knnsleepwalk

R package that allows for visualization of the KNN of an embedding compared to the KNN of the original high-dimensional data.

language-entropy

Using entropy to determine relative efficiency of written languages. I was trying to figure out if English or German is more efficient.

nnvis

Make KNN-based identity comparisons between different manifolds (eg. original space vs t-SNE space). For a comparable project using distance comparisons see https://anders-biostat.github.io/sleepwalk/ by by Svetlana Ovchinnikova and Simon Anders

preprint_dashboard

Scrapes bio/chem/medrxiv preprints and places them into a Dash table that you can filter.

preprint_history_by_tweets

Generates a sortable table of biorxiv and medrxiv twitter handle metadata.

pubmed_trends

Programmatically pull pubmed search results for predictive analytics.

rss_map

Make a context map of your RSS feed

sconify

Group CyTOF data into overlapping k-nearest neighborhoods for enhanced single-cell visualizations.

sleepwalk

Exploring dimension-reduced embeddings

text-graph

tjburns08.github.io

tweet_table

Create searchable and sortable tables of the tweet histories of your favorite twitter users.

twitter-mining-scilit

Mining automated paper-posting bots from twitter, especially useful to determine which pre-prints are being talked about.

twitter_archive_and_embed

Scrape tweets from any number of users, embed the tweets, do dimension reduction and clustering, and visualize them in an interactive interface.

umap-for-cytof

My early solution to running UMAP on your flow and mass cytometry data and compare it with t-SNE. Now I use the umap package in CRAN.