peterhpark / neuroclear Goto Github PK

Hello, when I'm trying to run the train demo (train_onecube.py), I got some mistakes. XIO: fatal IO error 0 (Success) on X server "localhost:12.0. I set a conda environment by the offered command. Can you help me to fix this?
Thank you!

Hello. Thank you for the good code.

It stopped at "Data Generator for Simulation.py," so I looked at it

Line 277, '_deform_grid.deform_grid_grad(dXs, displacement_f, output_offset, dYs, axis, order, mode, cval, inverse_affine)'
What's the problem with stopping at?

The first one works, but the second one doesn't.

Thank you.

(Environmental settings are I used neuroclear_env.yml )

P.S. it's resolved by myself, thanks!

Hello, When I try to run the train demo (train_onecube.py) in a conda environment, I got error.

Below is what I did

1. 「"ModuleNotFoundError: There is no module named models.cycle_gan_model"」
   So, I changed the code to "cycle_gan" -> "axial_to_lateral_gan_athena" (base_options.py, line 34)
   and it passed.

2. 「"ModuleNotFoundError: No module named 'data.braincube_dataset' "」
   So, I rewrote it as "braincube" -> "singlevolume" (base_options.py, line 49)
   and it passed.

3. 「"TypeError: stat: path should be string, bytes, os.PathLike or integer, not NoneType"」
   so, I changed the code to " help='path to images…' " -> " help='/home/my_username/neuroclear-v1.0.0/simulation_test/simulation_data/haystack/10000-lines-blurred-by-gaublur-std-4/blurred' " (base_options.py, line 25)

and try to code run, but the same error occurred.
I think the following is the problem, but I don't know how to do.
・Folder structure of data used for training
・How to specify the folder path

Or could it be some other cause?

thank you very much!