peterhpark / neuroclear Goto Github PK

Hello, when I'm trying to run the train demo (train_onecube.py), I got some mistakes. XIO: fatal IO error 0 (Success) on X server "localhost:12.0. I set a conda environment by the offered command. Can you help me to fix this?
Thank you!

P.S. it's resolved by myself, thanks!

Hello, When I try to run the train demo (train_onecube.py) in a conda environment, I got error.

Below is what I did

1. 「"ModuleNotFoundError: There is no module named models.cycle_gan_model"」
   So, I changed the code to "cycle_gan" -> "axial_to_lateral_gan_athena" (base_options.py, line 34)
   and it passed.

2. 「"ModuleNotFoundError: No module named 'data.braincube_dataset' "」
   So, I rewrote it as "braincube" -> "singlevolume" (base_options.py, line 49)
   and it passed.

3. 「"TypeError: stat: path should be string, bytes, os.PathLike or integer, not NoneType"」
   so, I changed the code to " help='path to images…' " -> " help='/home/my_username/neuroclear-v1.0.0/simulation_test/simulation_data/haystack/10000-lines-blurred-by-gaublur-std-4/blurred' " (base_options.py, line 25)

and try to code run, but the same error occurred.
I think the following is the problem, but I don't know how to do.
・Folder structure of data used for training
・How to specify the folder path

Or could it be some other cause?

thank you very much!

Hello. Thank you for the good code.

It stopped at "Data Generator for Simulation.py," so I looked at it

Line 277, '_deform_grid.deform_grid_grad(dXs, displacement_f, output_offset, dYs, axis, order, mode, cval, inverse_affine)'
What's the problem with stopping at?

The first one works, but the second one doesn't.

Thank you.

(Environmental settings are I used neuroclear_env.yml )