Package designed to check descriptions of sequence variants according to the Human Genome Sequence Variation Society (HGVS) guidelines.
Please see ReadTheDocs for the latest documentation.
A Boolean Algebra for Genetic Variants
Home Page: https://mutalyzer.nl/algebra
License: MIT License
Package designed to check descriptions of sequence variants according to the Human Genome Sequence Variation Society (HGVS) guidelines.
Please see ReadTheDocs for the latest documentation.
Sometimes duplicate edges (singular variants) are generated (the same variant between different nodes in the LCS graph).
For overlap detection a itertools.product
over these variants is explored. Reducing the number of variants will considerably increase the performance.
algebra/algebra/lcs/all_lcs.py
Line 174 in 2ac1499
Probably applicable to influence interval only.
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