cschin Goto Github PK
Name: Jason Chin
Type: User
Bio: Physics. Genomics. Software Engineering. Algorithm Development. DNA sequencing and more.
Jason Chin's Projects
agc
Assembled Genomes Compressor
algebra
A Boolean Algebra for Genetic Variants
algorithmica
New version of the website
aster
ASTER: Assembly STring graph ExploreR
bgzip-rs
bgzip support for Rust
bifx_notes
Random Bioinformatics Related Code and Note
binaryjs
Node binary websocket streaming made easy
bioconda-recipes
Conda recipes for the bioconda channel.
burn
BURN: Burn Unstoppable Rusty Neurons
candle
Minimalist ML framework for Rust
candle-gfn
a experimental implementation of GFN in Candle
clairvoyante
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
clairvoyante_demo
Running Clairvoyante (a convolutional deep neural network variant calls) from Ruibang, etc., on DNAnexus platform
claragenomicsanalysis
SDK for GPU accelerated genome assembly and analysis
cnp-clustering
Explore using "Conditional Neural Process" for clustering longitudinal data efficiently
daligner
Find all significant local alignments between reads
dash13-kir-mhc-assemblies
Repository for code and small data set for Dash13 Hackathon
dazz_db
The Dazzler Data Base
dcnet
DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
deepdivedeepvariant
This repository is for hosting Jupyter notebooks for examining a couple of internal processes in DeepVariant
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
docker-headless-vnc-container
Collection of Docker images with headless VNC environments
falcon
FALCON: experimental PacBio diploid assembler
falcon_the_very_original
Falcon: a set of small tools for fast aligning long reads for consensus and assembly
falcon_unzip
Making diploid assembly becomes common practice for genomic study
flyte
Kubernetes-native workflow automation platform for complex, mission-critical data and ML processes at scale. It has been battle-tested at Lyft, Spotify, Freenome, and others and is truly open-source.
gradio
Build and share delightful machine learning apps, all in Python. 🌟 Star to support our work!
hbar-dtk
Hierarchical based assembler development toolkit
hdf5-rust
HDF5 for Rust
humanidiogramlibrary
Resource of human chromosome schematics & images
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