Git Product home page Git Product logo

khmer's Introduction

khmer

Welcome to khmer: k-mer counting, filtering and graph traversal FTW!

https://badge.fury.io/py/khmer.png https://pypip.in/d/khmer/badge.png License http://ci.ged.msu.edu/job/khmer-master/badge/icon Python Code Health Coverity Scan Build Status

The official repository is at

https://github.com/ged-lab/khmer

and you can read the docs online here:

http://khmer.readthedocs.org/

There are two mailing lists dedicated to khmer, an announcements-only list and a discussion list. To search their archives and sign-up for them, please visit the following URLs:

You can contact the current maintainers at [email protected].

IMPORTANT NOTE: CITE US!

khmer is research software, so you should cite us when you use it in scientific publications! Please see the CITATION file for citation information.

INSTALL INSTRUCTIONS:

khmer requires a 64-bit operating system and Python 2.7+. Linux users will need the Python development libraries and gcc. OS X users may need XCode installed.

In short:

pip install khmer to download, build, and install the latest stable version.

For more details see doc/install.txt

The use of a virtualenv is recommended, see https://virtualenv.pypa.io/en/latest/virtualenv.html#installation

khmer is under the BSD license; see doc/LICENSE.txt. Distribution, modification and redistribution, incorporation into other software, and pretty much everything else is allowed.

khmer project contributors also edit documents collaboratively at our wiki.

MRC 2014-05-14

khmer's People

Contributors

accaldwell avatar b-wyss avatar bocajnotnef avatar camillescott avatar chuckpr avatar ctb avatar ctskennerton avatar drlabratory avatar echelon9 avatar edvenson avatar fishjord avatar hlwiencko avatar iglpdc avatar jas14 avatar jasonpell avatar jgluck avatar jiarong avatar jlippi avatar jts avatar kaben avatar kdm9 avatar luizirber avatar majoras-masque avatar mr-c avatar pgarland avatar qingpeng avatar ramrs avatar rodpic avatar sherineawad avatar themangoemoji avatar

Watchers

 avatar  avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.