mr-c Goto Github PK

2012-paper-diginorm

Paper source, analysis notebook, and data generation/analysis scripts for diginorm paper

2013-khmer-counting

2013-paper-ssspe

4 pager for http://wssspe.researchcomputing.org.uk/

2014-paper-wssspe14

2016-08-29-uwcswc

2017-cloud-workflows-misc

2020-covid-19-bh-viz

4dn-dcic-pipelines-cwl

Pipelines developed and used by 4DN-DCIC in Common Workflow Language

abyss

:microscope: Assemble large genomes using short reads

access-pipeline

Dual-Indexed UMI Sequencing Pipeline

advisory-database

Security vulnerability database inclusive of CVEs and GitHub originated security advisories from the world of open source software.

airflow

Apache Airflow

amazon-genomics-cli

amplicon

antlr4

ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files.

apercal

apptainer

Apptainer: Application containers for Linux

artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

arvados

An open source platform for managing and analyzing biomedical big data

assemblosis

CWL-based automated bioinformatics workflow for PacBio and Illumina data

assembly_with_decontamination

atlarge-phd-thesis-template

A LaTeX template for creating beautiful PhD theses, originally created by TU Delft.

autopore

Suite of CWL workflows for nanopore de novo assembly.

avxtoneon

Encapsulate the frequently used AVX instructions as independent modules to reduce repeated development workload.

awe

workflow and resource management system for bioinformatics data analysis

awesome-maintainers

Talks, blog posts, and interviews about the experience of being an open source maintainer

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

badge-test

badgen-icons

Icons for badgen service.

bamscale

BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.