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RNA-seq aligner

stellaris-emblem-lab

Copy of

structures

A collection of c++ data structures I've coded up for various projects

stub_uploader

Scripts and actions to auto-upload typeshed stubs to PyPI

styles

Styles for SWC/DC sites. Documentation at http://swcarpentry.github.io/lesson-example/.

sublinear-li-stephens

Calculates the probability of a haplotype given a population reference panel

surge

Synthesizer plug-in (previously released as Vember Audio Surge)

test-cwlexec

Running the CWL conformance tests with CWLEXEC

the-turing-way

Host repository for The Turing Way: a how to guide for reproducible data science

toil_badges

tool-registry-schemas

APIs for discovering genomics tools, their metadata and their containers

tools-iuc

Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

touchchip-debian

Automatically exported from code.google.com/p/touchchip-debian

transdecoder

TransDecoder source

trinity_ext_sample_data

more extensive sample data for exploring various Trinity supported analysis modules

trinityrnaseq

Trinity RNA-Seq de novo transcriptome assembly

typed_ast

typedload

Python library to load dynamically typed data into statically typed data structures

typeshed

Collection of library stubs for Python, with static types

typing

Work related to PEP 484: typing.py (released via PyPI) and issue tracker

udocker

A basic user tool to execute simple docker containers in batch or interactive systems without root privileges

user_guide

The CWL v1.0 - v1.2 user guide

variant-calling-tools

Variant calling tools

varscan2

Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files

veguns

This a CWL workflow to turn bacterial genomes from ensembl into a VG pangenome variation graph. And connects it to the protein world of UniProt :)

vg

tools for working with genome variation graphs

vim-cwl

CWL support in Vim

viral-pipelines

viral-ngs: complete pipelines

virtualenv

Virtual Python Environment builder