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Ming Hao's Projects

patientlevelprediction icon patientlevelprediction

An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.

pattern_classification icon pattern_classification

A collection of tutorials and examples for solving and understanding machine learning and pattern classification tasks

pbalign icon pbalign

pbalign maps PacBio reads to reference sequences and saves alignments to a BAM file

pbmm2 icon pbmm2

A minimap2 frontend for PacBio native data formats

pbsv icon pbsv

pbsv - PacBio structural variant (SV) calling and analysis tools

pcfp icon pcfp

PubChem fingerprint implementation based on the specification https://ftp.ncbi.nlm.nih.gov/pubchem/specifications/pubchem_fingerprints.txt

pcm icon pcm

A 3D-based method to annotate resistance genes

pconpy icon pconpy

a python module for generating protein contact maps and distance maps

pcons icon pcons

Protein Structure Consensus

pdb-tools icon pdb-tools

Set of utility scripts to manipulate PDB files

pdb2dssp icon pdb2dssp

Shell script for running dssp on large numbers of pdb files

pdb2fasta icon pdb2fasta

implementing PDB to FASTA file format conversion in multiple languages

pdb4amber icon pdb4amber

PDB analyzer and fixer for Amber simulations

pdbtools icon pdbtools

A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files

pdbtools-1 icon pdbtools-1

Tool(s) for cleaning, munging and analysing PDB files for structural bioinformatics analysis.

pepgm icon pepgm

Graphical model for taxonomic profiling

peptogrid icon peptogrid

PeptoGrid rescoring function for AutoDock Vina

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