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embl-single-cell-course-2016

Material for lecture at the EMBL Single Cell Course 2016

emma

Evaluation of Methods for dealing with Missing data in Machine Learning algorithms

emolfrag

eMolFrag is a molecular fragmentation tool based on BRICS algorithm written in Python.

empecon

Empirical Economics with R

empirical_calibration

empiricalcalibration

An R package for performing empirical calibration of observational study estimates

emscripten

Emscripten: An LLVM-to-JavaScript Compiler

emstreer

An R Package for Fast Computing and Plotting Euclidean Minimum Spanning Trees

encom

Elastic Network Contact Model (coarse-grained Normal Mode Analysis software)

endian

Ultra light-weight endian utility for C++11 (header only)

enlighten2

Protocols and tools to run (automated) atomistic simulations of enzyme-ligand systems

enlighten2-pymol

PyMOL plugin for enlighten2

ens-drms

ensmallen

A header-only C++ library for mathematical optimization --

entity-embedding-rossmann

envir

Simple utilities to manage R environments

envseq

Fully automated HIV-1 env plasmid sequencing analysis

epik-ligands

This repository contains ligands parametrized for MCCE using Epik to predict protonation states and OpenEye for charge assignment.

equalized_odds_and_calibration

Code and data for the experiments in "On Fairness and Calibration"

equidock_public

EquiDock: geometric deep learning for fast rigid 3D protein-protein docking

eric

An R package with src/man files for predictive modeling functions I've developed

espresso

The ESPResSo package

essurvey

Download data from the European Social Survey

etlutils

Utilities for easily loading big data from relational databases directly into ffdf objects in R.

eurostat

R tools for Eurostat data

evaluating-recommenders

Compute and plot NDCG for a recommender system

evcouplings

Evolutionary couplings from protein and RNA sequence alignments

eventnet

Event network analyzer (eventnet): statistical analysis of networks of relational events.

evidencesynthesis

An R package for combining evidence from multiple sources (e.g. multiple data sites)

evidently

Interactive reports to analyze machine learning models during validation or production monitoring.