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hibench

HiBench is a big data benchmark suite.

hic-inspector

HiC-inspector, a bioinformatics pipeline to facilitate the analysis of HiC dataset.

hicdat

Hi-C data analysis tool

hidetify

hiersdr

hierarchical sufficient dimension reduction

high-throughput-molecular-docking

High throughput molecular docking using AD Vina and virtual screening pipeline

highlighter_bot

Automate LANL's HIV mutation-highlighting tool

highs

Linear optimization software

hiplot

HiPlot makes understanding high dimensional data easy

history_of_statistics

Resources for learning about the history of statistics and statisticians. By statisticians, for statisticians.

histwords

Collection of tools for building diachronic/historical word vectors

hiv-1_progression-prediction

A kaggle competition to predict the likelihood that an HIV patient's infection will become less severe, given a small dataset and limited clinical information.

hiv-1gp160

hiv-phylo-analysis

Phylogenetic analysis of HIV-1 mutation patient sequencing data

hiv-prediction

Predicting Evolution of Resistance Mutations to NRTI Drugs in HIV-1 Using Computational and Statistical Methods

hiv1-aurkb

Scripts for analyzing HIV-1 producer cell proteomic and phosphoproteomic data

hiv1-evolutionary-dynamics

HIV-1 evolutionary dynamics under non-suppressive antiretroviral therapy

hiv1-fasta

fasta files for HIV1 protein peptide sequences

hiv1-protease-data-assignment

This was a mini project that I did for the Structural Bioinformatics course. It is a good example of how biological data can be modeled using machine learning techniques.

hiv1_docking

hiv1_prediction_prottrans

prediction of HIV-1 protease cleavage by using pretrained transformer model (ProtTrans)

hiv1pr-msm

Jupyter Notebook and associated modules and data set for performing Markov state model and conformational analyses of apo-HIV-1 protease from molecular dynamics simulations

hiv1pr-nacs

Repository of Notebook and analysis scripts for reproducing study of HIV-1 protease near attack conformation analysis from the paper: S.K. Sadiq‡ (2020) Catalysts, Fine-tuning of sequence-specificity by near attack conformations in enzyme-catalyzed peptide hydrolysis, 10 (6) 684

hiv1protease

Using machine learning techniques, attempted to predict the location of cleavage sites on HIV viruses

hivdrg

HIV drug resistance genotyping and synonymous / non synonymous AA mutant calling for various HIV references used in the PANGEA project

hivemall

Scalable machine learning library for Apache Hive/Spark/Pig

hivevo_reversion

Repository for the analysis and figures of Valentin Druelle's paper on HIV-1 reversion

hivfacts

Structured knowledge base of HIV-1/HIV-2.

hivia_tool

hivnucleoid

Coarse-grain Models of HIV Nucleoids