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View Code? Open in Web Editor NEWGermline DNM caller based on LdBG assembly of pathogens
License: Other
Germline DNM caller based on LdBG assembly of pathogens
License: Other
Please rename -ieg
command line argument to -g
. Also update usage from
Graph with inferred edges
to
Sorted cortex graph with inferred edges
and
Contigs (in FASTA format)
to
Contigs (in FASTA format - must be indexed with samtools)
If so, is there a command line hook for that?
Hi,
I am searching for cortexjdk to find. I tried to compile the master branch with ant. it produces corticall.jar. I cant find tools like RecoverExludedKmers or Join.
Thanks,
Moustafa
I think "The first uint64_t of a kmer_container is always partially empty unless the stored kmer fits exactly into the kmer_container." may be incorrect.
I think to be correct, the second word needs to be changed from first to last.
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