Comments (1)
Hi @wang0430
Thank you for your interest in SPOTlight! Cell type correlation just looks at how the predicted proportions of cells correlate within each spot. It does not take into account any Ligand-Receptor information.
Hope this helps,
Marc
from spotlight.
Related Issues (20)
- export SPOTlight results to 10x Genomics Loupe Browser HOT 3
- colData(sc_data)$subclass HOT 1
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- ERROR: dependency ‘arrangements’ is not available for package ‘SPOTlight’ HOT 4
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- plotInteractions HOT 8
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- plotSpatialScatterpie HOT 9
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- Q - Visium analysis - subset image and spot demultiplexing HOT 5
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