Comments (1)
Yes, the method should be applicable to both ST and Visium. The only difference is resolution/spot size and spot arrangement (hex vs grid)- but this doesn’t affect deconvolution w SPOTlight. There’s no supporting doc, but all is analogous given an appropriate single-cell reference.
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Related Issues (20)
- In README.md the processed object can not find HOT 2
- Regarding the PBMC (GSE133549) dataset used in the method HOT 1
- scatter plot circles instead of sctter pie circles HOT 1
- residuals of the sum of squares doesn't work for Seurat object HOT 2
- Prepare for upcoming Seurat v5 release
- How to plot specific cell type proportions in the newest version of spotlight? HOT 1
- SPOTlight_1.0.0 on Bioconductor .zip cannot be downloaded
- dplyr::mutate() Error HOT 2
- downsample_se_obj HOT 1
- Questions about some details in paper HOT 2
- Fixed Matrix version incompatible with SeuratObject HOT 1
- Passing dataframe with NAs into plotCorrelationMatrix HOT 1
- Error from `.extract_counts()` when calling `SeuratObject::GetAssayData()` v5.0.1 HOT 1
- assay %in% SeuratObject::Assays(x) is not TRUE HOT 2
- How to annotate a spot as a type of cell HOT 1
- Error in .extract_coord(x = x, slice = slice, img = img) : !is.null(colnames(x)) is not TRUE HOT 1
- Scatterpie
- HELP! imgData is not equal to the spatialcoords
- trainNMF error HOT 7
- Subset Cells in ScatterPie HOT 1
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