Comments (1)
hi @lardenoije Thank you for the heads up!
I was trying to figure out how to fix the discrepancy between Seurat and the Matrix package! Everything should be solved in the devel
branch and pushed to Bioconductor.
This should work now:
install_github("https://github.com/MarcElosua/SPOTlight@devel")
from spotlight.
Related Issues (20)
- plotInteractions result meaning HOT 1
- In README.md the processed object can not find HOT 2
- Regarding the PBMC (GSE133549) dataset used in the method HOT 1
- scatter plot circles instead of sctter pie circles HOT 1
- residuals of the sum of squares doesn't work for Seurat object HOT 2
- Prepare for upcoming Seurat v5 release
- How to plot specific cell type proportions in the newest version of spotlight? HOT 1
- SPOTlight_1.0.0 on Bioconductor .zip cannot be downloaded
- dplyr::mutate() Error HOT 2
- downsample_se_obj HOT 1
- Questions about some details in paper HOT 2
- Passing dataframe with NAs into plotCorrelationMatrix HOT 1
- Error from `.extract_counts()` when calling `SeuratObject::GetAssayData()` v5.0.1 HOT 1
- assay %in% SeuratObject::Assays(x) is not TRUE HOT 2
- How to annotate a spot as a type of cell HOT 1
- Error in .extract_coord(x = x, slice = slice, img = img) : !is.null(colnames(x)) is not TRUE HOT 1
- Scatterpie
- HELP! imgData is not equal to the spatialcoords
- trainNMF error HOT 7
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