plotSpatialScatterpie about spotlight HOT 9 CLOSED

Could you provide a bit more information please?

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I also have the error when run the function plotSpatialScatterpie( ).

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Hi @yutingdai1125 @wang0430
Could you please provide a reproducible example following these guidelines so that I can help you as efficiently as possible? Thank you!

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I found another error,

Error in plotImage(x = img) :
is.matrix(x) | is.character(x) | is.array(x) | is(x, "rastergrob") | .... is not TRUE

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Hi,

Can you return Seurat::Images(sample)? Can you also try to pass img = GetImage(sample, mode = "grob"))?

It is a bit hard to help you debug without further information,

Thank you,
Marc

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I don't think I'm the only one who encounters this problem. This happens when I use other public datasets, and I have been successful with these public datasets before. Have you modified your code recently? Need me to upload the data to you?

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I checked the source code and found that X (seurat object) was first converted into a matrix, and then x was required to be seurat, which caused me to keep making mistakes

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hi @wang0430

Can you try reinstalling SPOTlight from github?

devtools::install_github("https://github.com/MarcElosua/SPOTlight", ref = "main")

I have fixed that issue but haven't updated the code on Bioconductor, thank you for the heads up!

Marc

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hi @wang0430

Can you try reinstalling SPOTlight from github?

devtools::install_github("https://github.com/MarcElosua/SPOTlight", ref = "main")

I have fixed that issue but haven't updated the code on Bioconductor, thank you for the heads up!

Marc

hi,
I have recently encountered the same problem and have reinstalled as you suggested, but still no solution. What can I do please?

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