jchenpku Goto Github PK

dat4

General Assembly's Data Science course in Washington, DC

data-analysis

Data Analysis Using Python

datasciencer

a curated list of R tutorials for Data Science, NLP and Machine Learning

deepcc

a deep learning-based framework for cancer classification

deepdriver

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

dgi-db

Rails frontend to The Genome Institute's drug gene interaction database.

dgsea

disambiguate

Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem

dnascan

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

dncnn

Beyond a Gaussian Denoiser: Residual Learning of Deep CNN for Image Denoising (TIP, 2017)

docker-jdownloader-2

Docker container for JDownloader 2

driverml

DriverML identifies cancer driver genes. Rigorous and unbiased benchmark analysis and comparisons of DriverML with 20 other existing tools in 31 independent datasets from The Cancer Genome Atlas (TCGA) show that DriverML is robust and powerful among various datasets and outperforms the other tools with a better balance of precision and recall.

ebi_cancer_workshop_snv

ebi_cancer_workshop_visualization

EBI cancer workshop course materials

elevation

End-to-end guide design for CRISPR/Cas9 with machine learning

ensembl-vep

The Variant Effect Predictor predicts the functional effects of genomic variants

faceswap

Non official project based on original /r/Deepfakes thread. Many thanks to him!

facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

fishplot

Create timecourse "fish plots" that show changes in the clonal architecture of tumors

fit-sne

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

flasky

Companion code to my O'Reilly book "Flask Web Development", second edition.

free-programming-books

:books: Freely available programming books

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

frp

A fast reverse proxy to help you expose a local server behind a NAT or firewall to the internet.

fullstackpython.com

Full Stack Python source with Pelican, Bootstrap and Markdown.

fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data

gatk

Variant Discovery through GATK Pipeline

gatk-sv

A structural variation pipeline for short-read sequencing