jchenpku Goto Github PK

biocimagebuilder

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

bioinfosummer

Tutorial for AMSI BioInfoSummer 2018

brew

:beer::penguin: The Homebrew package manager for Linux

build-web-application-with-golang

A golang ebook intro how to build a web with golang

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

bwa-mem2

The next version of bwa-mem (WIP; not recommended for production uses at the moment)

canopy

Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.

carpools

Exploratory data analysis for pooled CRISPR/Cas9 screens

catt

An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

cell_counting_v2

cellcount

A Convolutional Neural Network for Segmenting and Counting Cells in Microscopy Images

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

chip-seq-pipeline

ChIP-Seq Pipeline implemented using Nextflow

chipenrich.data

Experimental version of data package associated with chipenrich

chipseq

Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.

chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline

chiptk

optimized protocol for processing 50-bp SE ChIP-seq

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing

combat-seq

Batch effect adjustment based on negative binomial regression for RNA sequencing count data

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

computer-science

:mortar_board: Path to a free self-taught education in Computer Science!

crispranalyzer

CRISPR-analyzer

crispresso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

crispresso2

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

cytoscape_workflows

collection of notebooks with different cytoscape workflows

d-gex

Deep learning for gene expression inference

d2l-zh

《动手学深度学习》，英文版即伯克利深度学习（STAT 157，2019春）教材。面向中文读者、能运行、可讨论。