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Gaussian Mixture Variational Autoencoder

Tensorflow Pytorch
Open In Colab Open In Colab

Implementation of Gaussian Mixture Variational Autoencoder (GMVAE) for Unsupervised Clustering in PyTorch and Tensorflow. The probabilistic model is based on the model proposed by Rui Shu, which is a modification of the M2 unsupervised model proposed by Kingma et al. for semi-supervised learning. Unlike other implementations that use marginalization for the categorical latent variable, we use the Gumbel-Softmax distribution, resulting in better time complexity because of the reduced number of gradient estimations.

Dependencies

  1. Tensorflow. We tested our method with the 1.13.1 tensorflow version. You can Install Tensorflow by following the instructions on its website: https://www.tensorflow.org/install/pip?lang=python2.
  • Caveat: Tensorflow released the 2.0 version with different changes that will not allow to execute this implementation directly. Check the migration guide for executing this implementation in the 2.0 tensorflow version.
  1. PyTorch. We tested our method with the 1.3.0 pytorch version. You can Install PyTorch by following the instructions on its website: https://pytorch.org/get-started/locally/.

  2. Python 3.6.8. We implemented our method with the 3.6.8 version. Additional libraries include: numpy, scipy and matplotlib.

References

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gmvae's Issues

What is categorical loss?

In /pytorch/model/GMVAE.py line 77, I see that the categorical loss, as defined in the file, is the negative entropy minus some constant. I find this confusing for two reasons:

  • This loss term is not mentioned in the original paper of the Gumbel-Softmax distribution (https://arxiv.org/pdf/1611.01144.pdf).

  • The constant term at the end of this loss can be omitted, right? It is a constant and it does not depend on network parameters. What is the motivation for this term?

I hope some comments can be added to this line of code. I can also help, too!

Tensorflow dependencies list is incomplete

Since this code was created in tensorflow v1, I cannot run it on my tensorflow v2 system.

Therefore, I need to build a new environment that can run this code. The readme lists the dependencies below:

python == 3.6.8
tensorflow == 1.13.1
numpy == version not listed
matplotlib == version not listed
scipy == version not listed

Other dependencies which are not listed:
keras
scikit-learn

Anyway, this is the system that I built to run this code. I'm posting this so that others can build a compatible system since installing old versions of packages and making sure they are compatible is a pain.

python == 3.6.8
tensorflow == 1.14
numpy == 1.19.5
matplotlib == 2.2.2
scipy == 1.5.0
keras == 2.3.1
scikit-learn == 0.23.2

That being said, thank you very much for providing this resource. I was finally able to run the code after installing all the versions I listed above, and it ran smoothly.

Entropy loss

Hello,

thanks for the nice implementation. I am having a hard time understanding the use of entropy loss in the GMVAE. why does it take the targets as real: (array) corresponding array containing the true labels? If I understood this correctly, there is no use for the true labels in the GMVAE training after all. Your help is much appreciated on this!

Performance on Cifar10

Hi @jariasf,

Thanks for your nice implementation. I was wondering whether you have implemented this method on Cifar10? Have you ever tried? I did and did not receive any improvement for clustering accuracy. What I did was to add a resnet18 feature extractor as the backbone to extract feature x (takes an image and extract x and then put through the network named py_x) and also a deconvolutional neural network as the decoder which took as the input z and generated the reconstructed image. Do you have any idea?

Best,
Mohammad

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