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slagelwa avatar slagelwa commented on September 25, 2024 1

Absolutely. It's pretty straightforward. There's an additional "Manifest" section in the sample sheet that contains name/filename pairs (typically PoolRNA,MixRNA_Manifest.txt and PoolDNA,MixDNA_Manifest.txt) which are then used in the samples section via an additional Manifest column whose value must match what's in the manifest section PoolRNA or PoolDNA).

Here's the illumina product page:

https://www.illumina.com/products/by-type/clinical-research-products/trusight-tumor-170.html

And an example file:

https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/trusight/trusight-tumor-170/trusight-tumor-170-v1-0-local-app-sample-sheet-template-1000000038524-00.zip

And the manual contains a good description of the sample sheet:

https://support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/trusight/trusight-tumor-170/trusight-tumor-170-v1-0-local-app-user-guide-1000000036413-00.pdf

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clintval avatar clintval commented on September 25, 2024

Could you provide an example or a link to documentation on the file format?

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clintval avatar clintval commented on September 25, 2024

Thanks! I'll add this in for another release. I've been meaning to support the [Manifests] section including arbitrary user-defined sections which is allowable by the general Illumina Sample Sheet specification.

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slagelwa avatar slagelwa commented on September 25, 2024

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clintval avatar clintval commented on September 25, 2024

Ok all set here! This library is still young so feel free to write back if you need more out of it!

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