clintval Goto Github PK

.dotfiles

My dashboard

aflatoxin-biomarker.pnas.1700759114

apricity-wallpapers

Apricity's set of included wallpapers

aur-packages

Packages I maintain on the Arch User Repository (AUR)

bimap

A modern bidirectional map in Scala

biodrawing

Small sketches of common ideas with a biology or bioinformatics theme.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

caseless

A typed dictionary in Python with case-insensitive keys

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

clintval.github.io

code-scanning-javascript-demo

GitHub Code Scanning Javascript Tutorial

comfort-coda

An Obsidian theme based on the background of Comfort Color Dark and the headers from Niko, with just a hint of CyberDynalSynth. This is my go-to theme for day to day working.

commons

Common scala utilities

comp-bio-conferences

Intl. Computational Biology & Bioinformatics conferences on the CLI

coursework

cvbio

Artisanal 🤣 bioinformatics tools and pipelines in Scala

dagr

A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs

dataclass-csv

Map CSV to Data Classes

dotenv-java

🗝️ Dotenv is a no-dep, pure Java module that loads environment variables from a .env file

example-plugin

A miniature example of a MultiQC plugin.

fgbio

Tools for working with genomic and high throughput sequencing data.

fullypeek

Peek forward in a Rust iterator as far as you'd like, memory allowing!

fullypeekable

Peek forward in a Scala iterator as far as you'd like, memory allowing!

gatk

Official code repository for GATK versions 4 and up

genome-browser

A lightweight Python graphing API for genomic features

gimme

Provisioning stack for EC2 instances powered by Vagrant and Ansible (unmaintained, difficult to use on new MacOS)

groupingiterator

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

interfacea

Library to analyze energetics of protein/xNA complexes