biogeeker Goto Github PK

ntjoin

🔗Genome assembly scaffolder using minimizer graphs

nucleoatac

nucleosome calling using ATAC-seq

omegafold

OmegaFold Release Code

orthofinder

Phylogenetic orthology inference for comparative genomics

parallelfold

Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting multiple structures

pasapipeline

PASA software

pbbioconda

PacBio Secondary Analysis Tools on Bioconda

pesto

phyloctcflooping

Studying 3D genome evolution using genomic sequence

pipeline-nanopore-ref-isoforms

Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools

piston

Evaluating Protein Binding Interfaces with Transformer Networks

plant_rgenes

plastid

Position-wise analysis of sequencing and genomics data

prompt2model

prompt2model - Generate Deployable Models from Natural Language Instructions

protein_bert

protein_seq_des

Code for our paper "Protein sequence design with a learned potential"

proteinlm

Protein Language Model

prottrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

provis

Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pygenomeviz

A genome visualization python package for comparative genomics

pyscaf

Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

pystacknet

python

All Algorithms implemented in Python

python-100-days

Python - 100天从新手到大师

python-cookbook

Code samples from the "Python Cookbook, 3rd Edition", published by O'Reilly & Associates, May, 2013.

python-for-genomic-data-science-2015-coursera

Python for Genomic Data Science 2015 Coursera from Johns Hopkins University

python-guide

Python best practices guidebook, written for humans.

python3-spider

Python爬虫实战 - 模拟登陆各大网站 包含但不限于：滑块验证、拼多多、美团、百度、bilibili、大众点评、淘宝，如果喜欢请start ❤️

pythondatasciencehandbook

Python Data Science Handbook: full text in Jupyter Notebooks