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gmx_mmpbsa

gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.

gmxtools

tools for GROMACS

gnina

A deep learning framework for molecular docking

gnn_ppi

Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".

gushr

Generating UTRs from SHort Reads

hands-on-machine-learning

A series of Jupyter notebooks with Chinese comment that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

hmm-model

hpcleap_dnds

Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioinformatics information available, then allow the user to compare selective pressures acting along the protein sequence vs. an overlay of functional protein domain annotations.

hsm

Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."

hvnlr

hyphy

HyPhy: Hypothesis testing using Phylogenies

in-depth-ngs-data-analysis-course

interproscan

irfinder

Detecting intron retention from RNA-Seq experiments

jcvi

Python library to facilitate genome assembly, annotation and comparative genomics

joyful-pandas

Pandas中文教程

learn_dl

Deep learning algorithms source code for beginners

leetcode

LeetCode Solutions: A Record of My Problem Solving Journey.( leetcode题解，记录自己的leetcode解题之路。)

leetcodeanimation

Demonstrate all the questions on LeetCode in the form of animation.（用动画的形式呈现解LeetCode题目的思路）

liftoff

An accurate GFF3/GTF lift over pipeline

linkview

DNA序列比对结果 可视化展示工具

lja

localcolabfold

ColabFold on your local PC

machinelearning

My blogs and code for machine learning. http://cnblogs.com/pinard

mashmap

A fast approximate aligner for long DNA sequences

masif

MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.

mcsplicer

metallaxis

A Python GUI VCF viewer for SNP, indels, and TE.

mgra