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100-days-of-ml-code

100 Days of ML Coding

2019-smorf

Scripts to identify small open reading frames using ribosome profiling data

af2complex

Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

agora

Algorithm For Gene Order Reconstruction in Ancestors

agrenseq

ai2bmd

AI-powered ab initio biomolecular dynamics simulation

ailearning

AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP

aligngraph2

Similar genome assisted reassembly pipeline for PacBio long reads

alphafold

Open source code for AlphaFold.

ambigram

Evolutionary Chromosome Breakpoints Validator

ancestral_genome_reconstruction

Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO

angel

Robust Open Reading Frame prediction (ANGLE re-implementation)

arcs

🌈Scaffold genome sequence assemblies using linked read sequencing data

astral

Accurate Species TRee ALgorithm

atac-seq

Basic workflow for ATAC-seq analysis

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atac-seq_qc_analysis

Atac-seq QC matrix

atac_analysis

For ATAC-seq analysis (papers, scripts and tools).

auto-sklearn

Automated Machine Learning with scikit-learn

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-chatgpt-prompts

This repo includes ChatGPT prompt curation to use ChatGPT better.

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

bat1k

Perl scripts used in Bat1K annotation for adding splice informative isoforms

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bedtools2

bedtools - the swiss army knife for genome arithmetic

bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

bio-playground

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.