Comments (4)
It won't work with python 3.10
from bioconda-utils.
Hi @dpryan79 , thanks for your reply. As I mentioned above, it doesn't work with python 3.6, 3.7, 3.8 and 3.9 either. Is that expected too?
from bioconda-utils.
I'm guessing that initially you're getting python from the defaults channel rather than conda-forge and that that is the source of the unsatisfiable solution. Make sure you have conda-forge in your channel list as the highest-priority channel at all times. Then things like this will work:
mamba create -dn foo bioconda-utils=1.0.1
In my case it used python 3.7.
from bioconda-utils.
Yes, I get python from the default channel. Following your comment, first I tried to create an environment with python 3.9 from conda-forge, and install bioconda-utils
conda create -n test -c conda-forge python=3.9
conda activate test
conda install -c bioconda bioconda-utils
and got the same error
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: /
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:
- feature:/linux-64::__glibc==2.28=0
- feature:|@/linux-64::__glibc==2.28=0
Your installed version is: 2.28
I then downgraded python to the version you used, 3.7, and then tried to install bioconda-utils again, to see whether the problem is with the python version
conda install -c conda-forge python=3.7
conda install -c bioconda bioconda-utils
and that worked. It downloaded 188.4 MB of packages. Thanks, @dpryan79 !
from bioconda-utils.
Related Issues (20)
- another fix for the mulled build memory limitations
- bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0 problems with installation HOT 7
- There are outdated links to http://conda.pydata.org
- autobump selects older hifiasm version due to changing tag pattern
- Non-zero exit code but package get's build and uploaded successfully
- Cannot install bioconda-utils: UnsatisfiableError HOT 4
- Possibility to skip downloading channel info
- Invalid version: '' error in bioconda-utils autobump
- Bioconda pins an old libdeflate no longer present in conda-forge's current_repodata HOT 2
- GithubRelease assets are not found via autobump HOT 3
- test/source_files seems dysfunctional in mulled tests HOT 2
- BiocondaBot merge seems broken HOT 2
- False positive lint `version_constraints_missing_whitespacewhen` for unequal constraint `!=` HOT 1
- argh.exceptions.AssemblingError when using bioconda-utils HOT 2
- autobump for GitHub releases fails - presumably because of broken regex HOT 1
- An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0'. HOT 3
- Make git-lfs available at cloning time ? HOT 2
- Current extended-base (`quay.io/bioconda/base-glibc-debian-bash:3.0`) for container builds yields docker images unusable on some systems HOT 10
- ERROR: recipes/vcboost/meta.yaml:0: linter_failure: An unexpected exception was raised during linting
- bioconda-utils autobump --create-pr crashes, but adding --no-shuffle fixes it
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from bioconda-utils.