Comments (2)
jmarshall
commented on August 13, 2024
See also PR bioconda/bioconda-recipes#40675 which proposes patching repodata of existing htslib et al packages so that they will be satisfied by libdelate 1.14–1.18 in addition to the 1.13 they were originally built against. This would be an alternative to updating the pinning and rebuilding (though there remain other reasons for doing that too, notably that the pinning update would add builds against openssl 3).
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jmarshall
commented on August 13, 2024
That PR has now been merged, so the libdeflate issue has been addressed by repodata patching.
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Related Issues (20)
- Lint if `ignore_run_exports` is in wrong section (under requirements, instead of build)
- `bioconda-utils build` errors with `clangxx_osx-arm64 16.* does not exist (perhaps a typo or a missing channel).` HOT 3
- Add version option for `bioconda-utils` cli command HOT 2
- Pass verbosity level to `conda-build`, otherwise very hard to debug
- Lint errors for bumped build number if PR made shortly after merge of new version
- GithubRelease assets are not found via autobump HOT 3
- test/source_files seems dysfunctional in mulled tests HOT 2
- BiocondaBot merge seems broken HOT 2
- False positive lint `version_constraints_missing_whitespacewhen` for unequal constraint `!=` HOT 1
- argh.exceptions.AssemblingError when using bioconda-utils HOT 2
- autobump for GitHub releases fails - presumably because of broken regex HOT 1
- An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0'. HOT 3
- Make git-lfs available at cloning time ? HOT 2
- Current extended-base (`quay.io/bioconda/base-glibc-debian-bash:3.0`) for container builds yields docker images unusable on some systems HOT 10
- ERROR: recipes/vcboost/meta.yaml:0: linter_failure: An unexpected exception was raised during linting
- bioconda-utils autobump --create-pr crashes, but adding --no-shuffle fixes it
- Fail to install on python 3.12
- PermissionError: [Errno 13] Permission denied: 'docker' HOT 2
- `mulled-build` of Python package (no deps) fails in bioconda-utils >=2.15 HOT 3
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