Comments (2)
aliciaaevans
commented on August 13, 2024
@matrulda bioconda-utils 2.8.0 has been released and pushed to the channel now. Can you give it a try with a fresh conda environment and see if you still have the issue?
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matrulda
commented on August 13, 2024
Sorry for the very late reply! @aliciaaevans I tried setting up a new environment with conda (23.10.0):
conda create -n bioconda -c conda-forge -c bioconda bioconda-utils
It installed bioconda-utils v2.11.1, but I still have the same issue. It has to be something with my setup, but I really don't understand what. I have tried to re-install mamba/conda, but the result is the same 🤷
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Related Issues (20)
- Lint if `ignore_run_exports` is in wrong section (under requirements, instead of build)
- `bioconda-utils build` errors with `clangxx_osx-arm64 16.* does not exist (perhaps a typo or a missing channel).` HOT 3
- Add version option for `bioconda-utils` cli command HOT 2
- Pass verbosity level to `conda-build`, otherwise very hard to debug
- Lint errors for bumped build number if PR made shortly after merge of new version
- Bioconda pins an old libdeflate no longer present in conda-forge's current_repodata HOT 2
- GithubRelease assets are not found via autobump HOT 3
- test/source_files seems dysfunctional in mulled tests HOT 2
- BiocondaBot merge seems broken HOT 2
- False positive lint `version_constraints_missing_whitespacewhen` for unequal constraint `!=` HOT 1
- autobump for GitHub releases fails - presumably because of broken regex HOT 1
- An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0'. HOT 3
- Make git-lfs available at cloning time ? HOT 2
- Current extended-base (`quay.io/bioconda/base-glibc-debian-bash:3.0`) for container builds yields docker images unusable on some systems HOT 10
- ERROR: recipes/vcboost/meta.yaml:0: linter_failure: An unexpected exception was raised during linting
- bioconda-utils autobump --create-pr crashes, but adding --no-shuffle fixes it
- Fail to install on python 3.12
- PermissionError: [Errno 13] Permission denied: 'docker' HOT 2
- `mulled-build` of Python package (no deps) fails in bioconda-utils >=2.15 HOT 3
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