Name: Matilda Åslin
Type: User
Company: Uppsala University, SciLifeLab Genomics, NGI Uppsala
Bio: [She/Her]
Bioinformatician/System developer at NGI Uppsala, SciLifeLab.
Location: Uppsala, Sweden
Matilda Åslin's Projects
Provides a simple http-interface for Illumina bcl2fastq
Service for checking md5sums
The arteria python module is a library of helper classes for the Arteria project.
Micro-service to carry out deliveries on Uppmax
StackStorm packs to automate sequencing center operations
A webservice used to monitor runfolders from Illumina instruments and check what state they are in (e.g. ready to process or not).
Conda recipes for the bioconda channel.
🎨 Create and share beautiful images of your source code
Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.
checkqc inspects the content of a runfolder and determines if it passes a set of quality criteria
Extensions for Clarity
Demultiplexing pipeline for sequencing data
Python interface to the GenoLogics LIMS server via its REST API.
Make a shopping list from your favorite recipes
Ansible playbooks for provisioning NGI pipeline and related sw
Stand-alone scripts deployed to Irma
Ansible playbooks for provisioning NGI cluster Miarka
Repository to host tool-specific module files for the Nextflow DSL2 community!
Aggregate results from bioinformatics analyses across many samples into a single report.
Code driving the production pipeline at SciLifeLab
A portal for orders (requests, project applications, etc) to a facility from its users.
Application used to populate ProjMan with runfolder data
Application used to populate ProjMan with runfolder data
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing
(hopefully nf-core) pipeline to inspect your sequences
In this repository we will gather useful scripts that can be used in the process of developing new sequencing report at the SNP&SEQ Technology platform
Service producing and displaying sequencing reports.
Pipeline scripts for processing and QC of Illumina HiSeq and MiSeq data