Please accept my apologies for this newbie question. I cannot intall

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Works like a charm! What I did: <div class="snippet-clipboard-co

Cannot install bioconda-utils: UnsatisfiableError about bioconda-utils HOT 4 CLOSED

mzytnicki commented on August 13, 2024

Cannot install bioconda-utils: UnsatisfiableError

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Comments (4)

daler commented on August 13, 2024

@mzytnicki have you set up your channels using the instructions at https://bioconda.github.io/?

If you don't want to do that, you'll need to use --channel conda-forge --channel bioconda --strict-channel-priority instead of just -c bioconda.

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mzytnicki commented on August 13, 2024

@daler thanks for the help!
Yes, I forgot to mention that I typed this beforehand:

$ conda config --add channels defaults
$ conda config --add channels bioconda
$ conda config --add channels conda-forge
$ conda config --set channel_priority strict

The result is still

Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:
                                                                                                                                                                                                           
  - feature:/linux-64::__glibc==2.35=0 
  - feature:|@/linux-64::__glibc==2.35=0
                                                                                                                                                                                                                                                                                                                 
Your installed version is: 2.35

Which I cannot make sense of...

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daler commented on August 13, 2024

Ok, next thing to try is to put bioconda-utils in its own environment, and while you're at it, install with mamba. That way the environment is created the same way as we do on the CI infrastructure.

e.g.,

mamba create -n bioconda bioconda-utils

It is likely that whatever environment you're installing into has some existing packages that are incompatible with bioconda-utils dependencies.

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mzytnicki commented on August 13, 2024

Works like a charm!

What I did:

$ wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
$ bash Miniconda3-latest-Linux-x86_64.sh 
$ source ~/.bashrc
$ mamba create -n bioconda bioconda-utils
$ bioconda-utils -h
  [...]

from bioconda-utils.

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