bedtools-protocols's People
Forkers
xtmgah merckey jhzhao emmaggie thomasyu888 peterdfields b1234561 simexin cytang19 areddy3208 snashraf lauraalazar zzygyx9119 shrutimarwaha boykos genomicsiter qliugithub semdogan solyris watsonwoo xjyx wqhf prosaddas alexanderjlopezbedtools-protocols's Issues
Incomplete output in bedtools coverage for exome capture sequencing
Dear all,
I would like to run bedtools coverage to plot depth in an exome capture experiment, but I have found some issues while running the example from the protocol. I am using v.2.29 (the one installed in the HPC that I am using), and even I use -abam and -b for bam and bed files, respectively, or -b for bam and -a for bed (as from v2.24), the resulting table shows just 0 or 1 depth coverage (similar to what is showed here).
Does somebody know what I might be doing wrong?
Thank you very much for your time in advance.
No makefile
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. ๐๐๐
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google โค๏ธ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.