snashraf Goto Github PK

adam-ibs

Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM

admixtools

Tools test whether admixture occurred and more

advancedheatmaptutorial

for YouTube Channel

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

aligner_benchmark

altair

Declarative statistical visualization library for Python

analysis-workflows

MGI's Analysis Workflows and Pipelines managed by the BGA group.

ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

annotables

R data package for annotating/converting Gene IDs

annotation-pipeline

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

appliedgenomics

JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

arnapipe

array_cnv_analysis

Example R scripts to run burden and association analysis on array CNV data

asciigenome

Text Only Genome Viewer! Docs:

asdpex

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

awesome-microbes

List of computational resources for analyzing microbial sequencing data.

awesome-public-datasets

An awesome list of high-quality open datasets in public domains (on-going). By everyone, for everyone!

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

babelomics

bam-readcount

count DNA sequence reads in BAM files

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

bashplotlib

plotting in the terminal

bears_iplant

bedtools-protocols

benchmarking-tools