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2019-humanembryo3d

The scripts of the main steps of the analysis in human embryo 3D project

5c-pro

Pipeline for single-end 5C processing

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

ads1-slides

Slides for Algorithms for DNA Sequencing Coursera class

advanced_multiloops

Algorithms for advanced models of multi-loop free energy

afp

Collections of tools for data analysis in biology

ailearning

AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP

algorithm-visualizer

:fireworks:Interactive Online Platform that Visualizes Algorithms from Code

algorithm_interview_notes-chinese

2018/2019/校招/春招/秋招/算法/机器学习(Machine Learning)/深度学习(Deep Learning)/自然语言处理(NLP)/C/C++/Python/面试笔记

algorithms

Bug-tracking for Jeff's algorithms book, notes, etc.

algs4

Algorithms, 4th edition textbook code and libraries

apa_atinglab2019

DNA methylation regulates alternative polyadenylation via CTCF and the cohesin complex (2019 paper submission)

appliedgenomics2018

Materials for Spring 2018 Applied Genomics Course

arabidopsis_crwn1_chromatin

armatus

atac-seq

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

atacseq-workflow

The ENCODE DCC ATAC-seq pipeline, adapted for Krews

awesome-algorithm

LeetCode, HackRank, 剑指offer, classic algorithm implementation

awesome-machine-learning-1

Learning Resources And Links Of Machine Learning（updating）

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

awesome_dnn_researchers

We will introduce the researchers who made great contributions to DNNs in the projects.

awk

One true awk

balancer-paper

Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila melanogaster

bam-readcount

count DNA sequence reads in BAM files

bamr

Utilities for working wih bam files in R

bamsam-scripts

a set of programs initiated by Georgi Marinov for .sam file/.bam file processing

bamtools

C++ API & command-line toolkit for working with BAM data

bamutil