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Run our state-of-the-art connectivity pipeline
If you use this pipeline, please cite:
Kurtzer GM, Sochat V, Bauer MW Singularity: Scientific containers for
mobility of compute. PLoS ONE 12(5): e0177459 (2017)
https://doi.org/10.1371/journal.pone.0177459
P. Di Tommaso, et al. Nextflow enables reproducible computational workflows.
Nature Biotechnology 35, 316โ319 (2017) https://doi.org/10.1038/nbt.3820
If you are on Linux, we recommend using the Singularity to run connectoflow pipeline.
If you have Singularity == 3.*, launch your Nextflow command with:
-with-singularity scilus/scilus:1.2.1_connectoflow-1.1.0
If you have rebuild singularity Singularity == 2.* image is available here
Launch your Nextflow command with: -with-singularity ABSOLUTE_PATH/scilus-1.2.1_connectoflow-1.1.0.img
If you are on MacOS or Windows, we recommend using the Docker container to run connectoflow pipeline.
Launch your Nextflow command with:
-with-docker scilus/scilus:1.2.1_connectoflow-1.1.0
See USAGE or run nextflow run main.nf --help