scilus Goto Github PK

.github

atlas_arnold

bst_flow

Bundle Specific Tractography pipeline

cave-fibers

A project to bring Fiber tractography visualization and interaction to the University of Sherbrooke's CAVE

combine_flows

connectoflow

containers-cbrain

containers-dmriqc

Docker container for Diffusion MRI Quality Check

containers-scilus

Files needed to build a container to run all scilus flows.

containers-tractoflow

Files needed to build a Singularity container to run the TractoFlow pipeline

convert_set_flow

disco_challenge

disconets_flow

disconnect_flow

dmri-explorer

A real-time diffusion MRI viewer for Linux and Windows using OpenGL 4.6.

dmriqc_flow

A Nextflow pipeline for diffusion MRI quality check

dmriqcpy

Diffusion MRI Quality Check in python

docker-base-scilus

Base container containing dependencies that do not frequently change for the Tractoflow singularity

docker-vtk-8.2.0

Docker for VTK 8.2.0 with Mesa for offscreen rendering

extractor_flow

extractor_flow_documentation

Extractor_Flow

fibercompression

A tool for tractography streamlines compression

fibernavigator

The original Fibernavigator: tool for vizualization of DTI and MRI data

freesurfer_flow

freewater_flow

general-utils

General utilities and scripts used in the lab.

hot_dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

ihmt_flow

Flow for ihmt processing

infant-dwi

Complete pipeline to perform tractography from infant diffusion MRI data.

ismrm_2015_tractography_challenge_scoring

Scripts used to recreate the results of the ISMRM 2015 Tractography Challenge