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Arnaud Bore's Projects

andysbrainbook icon andysbrainbook

This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

aodf-toolkit icon aodf-toolkit

Python toolkit for estimating asymmetric ODFs by filtering a symmetric ODF image

containers-scilus icon containers-scilus

Files needed to build a container to run all scilus flows (except dmriqc_flow)

dcm2bids icon dcm2bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

dipy icon dipy

Diffusion MR imaging in Python

dmriqc_flow icon dmriqc_flow

A Nextflow pipeline for diffusion MRI quality check

dwi_ml icon dwi_ml

Code for people working on machine learning for diffusion MRI

microbrain icon microbrain

Fully automated whole-brain diffusion MRI analysis of grey matter

mrtrix3 icon mrtrix3

MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

nf-modules icon nf-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

scilpy icon scilpy

The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox

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