Comments (4)
It takes the pandas data.frame as input. Row indexes must be 'MutationTypes'.
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Thank you!
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Adding to Venu's comment, you will not able to use the "check-rule" when you use dataframe as the input of data. This is because we can get some information from vcf files that we don't get from a matrix.
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Closing issue for inactivity. Please reopen if you have any additional questions and thanks for your interest.
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Related Issues (20)
- Input differs than output of SigProfilerExtractor HOT 11
- minimum threshold for reported signatures? HOT 1
- New signatures on COSMIC website HOT 7
- Missing Subfolders HOT 1
- S should be uppercase for filename "signatures.txt" in spss.py script HOT 8
- ID decomposition support? HOT 2
- gzip VCF files HOT 1
- DBS and Indels signature missing
- Vcf input doesn't work with other signatures than default ones HOT 10
- Can this tool be used with a different genome? HOT 1
- Assignment of mutational signatures with SigProfilerSingleSample
- Error when running SigProfilerSingleSample. HOT 4
- SigProfilerSingleSample not used by CNV signature HOT 1
- IndexError when run with GRCh38 HOT 2
- Sigprofiler single sample decomposition profile doesn't match match COSMIC signature database? HOT 1
- Can ID signatures be run on vcfs from build 38? HOT 1
- KeyError: '7_pvalue' HOT 1
- index out of range HOT 3
- copy number signature HOT 1
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